MIRA Documentation

Table of Contents

• Sources of model content
  • ASKEM AMR (mira.sources.amr)
  • ASKEM AMR Petri nets (mira.sources.amr.petrinet)
  • ASKEM AMR Stockflow (mira.sources.amr.stockflow)
  • ASKEM AMR Regulatory nets (mira.sources.amr.regnet)
  • Reconstruct ODE semantics (mira.sources.amr.flux_span)
  • SBML extraction (mira.sources.sbml)
  • SBML Qual extraction (mira.sources.sbml.qual_api)
  • BioModels client (mira.sources.biomodels)
  • SymPy ODE extraction (mira.sources.sympy_ode)
  • Bilayer extraction (mira.sources.bilayer)
  • ACSets Petri Net extraction (mira.sources.acsets.petri)
  • ACSets Stockflow extraction (mira.sources.acsets.stockflow)
  • ACSets Decapodes extraction (mira.sources.acsets.decapodes.decapodes)
  • ACSets DecaExpr extraction (mira.sources.acsets.decapodes.deca_expr)
  • Vensim models (mira.sources.system_dynamics.vensim)
  • Stella models (mira.sources.system_dynamics.stella)
  • PySD models (mira.sources.system_dynamics.pysd)
  • SIF networks (mira.sources.sif)
  • Utility Methods (mira.sources.util)
• Meta-model
  • Template model (mira.metamodel.template_model)
  • Templates (mira.metamodel.templates)
  • Operations (mira.metamodel.ops)
  • Model comparison (mira.metamodel.comparison)
  • Meta-model schema (mira.metamodel.schema)
  • Model search (mira.metamodel.search)
  • Model I/O (mira.metamodel.io)
  • Units (mira.metamodel.units)
  • Utilities (mira.metamodel.utils)
  • Decapodes (mira.metamodel.decapodes)
  • Composition (mira.metamodel.composition)
• Modeling
  • Modeling module (mira.modeling)
  • ASKEM AMR Petri net generation (mira.modeling.amr.petrinet)
  • ASKEM AMR Stockflow generation (mira.modeling.amr.stockflow)
  • ASKEM AMR operations (mira.modeling.amr.ops)
  • ASKEM AMR Regulatory net generation (mira.modeling.amr.regnet)
  • Model visualization (mira.modeling.viz)
  • ODE model generation and simulation (mira.modeling.ode)
  • ACSets Petri net model generation (mira.modeling.acsets.petri)
  • ACSets Stockflow model generation (mira.modeling.acsets.stockflow)
  • Bilayer model generation (mira.modeling.bilayer)
  • SBML model generation (mira.modeling.sbml)
• Domain Knowledge Graph
  • DKG (mira.dkg)
  • ASKEMO (mira.dkg.askemo)
  • Client (mira.dkg.client)
  • Construct (mira.dkg.construct)
  • Constructing Registry (mira.dkg.construct_registry)
  • Configuration Models (mira.dkg.models)
  • Units (mira.dkg.units)
  • App Utilities (mira.dkg.utils)
  • Web Client (mira.dkg.web_client)
• Metaregistry
  • Metaregistry Utils (mira.dkg.metaregistry.utils)
• Terarium Client
  • Terarium Client (mira.terarium_client)
• Examples
  • Curated Example Models
  • Decapode Examples (mira.examples.decapodes.decapodes_examples)
• Decapodes vs DecaExpr Composite models
  • DecaExpr JSON files
  • Decapodes JSON files
  • Load Decapode JSON files into MIRA Decapode class
  • Load DecaExpr JSON files into MIRA DecaExpr class

Indices and Tables

• Index

• Module Index

• Search Page